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Creators/Authors contains: "Oliveira, Luca Cerny"

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  1. Recent advances in Critical Congenital Heart Disease (CCHD) research using Photoplethysmography (PPG) signals have yielded an Internet of Things (IoT) based enhanced screening method that performs CCHD detection comparable to SpO2 screening. The use of PPG signals, however, poses a challenge due to its measurements being prone to artifacts. To comprehensively study the most effective way to remove the artifact segments from PPG waveforms, we performed feature engineering and investigated both Machine Learning (ML) and rule based algorithms to identify the optimal method of artifact detection. Our proposed artifact detection system utilizes a 3-stage ML model that incorporates both Gradient Boosting (GB) and Random Forest (RF). The proposed system achieved 84.01% of Intersection over Union (IoU), which is competitive to state-of-the-art artifact detection methods tested on higher resolution PPG. 
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  2. The need for manual and detailed annotations limits the applicability of supervised deep learning algorithms in medical image analyses, specifically in the field of pathology. Semi-supervised learning (SSL) provides an effective way for leveraging unlabeled data to relieve the heavy reliance on the amount of labeled samples when training a model. Although SSL has shown good performance, the performance of recent state-of-the-art SSL methods on pathology images is still under study. The problem for selecting the most optimal data to label for SSL is not fully explored. To tackle this challenge, we propose a semi-supervised active learning framework with a region-based selection criterion. This framework iteratively selects regions for an-notation query to quickly expand the diversity and volume of the labeled set. We evaluate our framework on a grey-matter/white-matter segmentation problem using gigapixel pathology images from autopsied human brain tissues. With only 0.1% regions labeled, our proposed algorithm can reach a competitive IoU score compared to fully-supervised learning and outperform the current state-of-the-art SSL by more than 10% of IoU score and DICE coefficient. 
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